Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Gm15240-201ENSMUST00000118156 720 ntBASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Gm9109-201ENSMUST00000120254 1405 ntBASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Gm17150-201ENSMUST00000165577 381 ntBASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC15.13■□□□□ 0.01
Trim54Q9ERP3 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Gm10605-202ENSMUST00000183019 3198 ntBASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Gm15824-201ENSMUST00000119516 955 ntBASIC15.12■□□□□ 0.01
Trim54Q9ERP3 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Gm6266-201ENSMUST00000203844 806 ntBASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Gm18905-201ENSMUST00000205454 928 ntBASIC15.12■□□□□ 0.01
Trim54Q9ERP3 AC155258.1-201ENSMUST00000219303 253 ntBASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Trim54Q9ERP3 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Mir7085-201ENSMUST00000184353 66 ntBASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Trim54Q9ERP3 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 B3gntl1-201ENSMUST00000062654 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Gm44719-201ENSMUST00000206404 149 ntBASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Trim54Q9ERP3 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms