Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Rgs6-207ENSMUST00000186323 1308 ntTSL 5 BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Scn4aQ9ER60 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Isl1-202ENSMUST00000176044 1198 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Gm29155-201ENSMUST00000185910 269 ntBASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Klf15-204ENSMUST00000203607 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 AC091458.1-201ENSMUST00000220902 1361 ntBASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC18.6■□□□□ 0.57
Scn4aQ9ER60 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 AC159462.1-201ENSMUST00000214822 687 ntTSL 5 BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Scn4aQ9ER60 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Gm25545-201ENSMUST00000122673 323 ntBASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Nmur1-201ENSMUST00000027440 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 AC126549.2-201ENSMUST00000223997 1976 ntBASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC18.59■□□□□ 0.57
Scn4aQ9ER60 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC18.58■□□□□ 0.57
Scn4aQ9ER60 Gm13296-201ENSMUST00000117854 997 ntBASIC18.58■□□□□ 0.57
Scn4aQ9ER60 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC18.58■□□□□ 0.57
Scn4aQ9ER60 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.57
Scn4aQ9ER60 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Scn4aQ9ER60 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Scn4aQ9ER60 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Scn4aQ9ER60 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Gm45495-201ENSMUST00000200940 1700 ntBASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Spata3-207ENSMUST00000135440 732 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Gzmn-202ENSMUST00000225535 989 ntBASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Spata3-201ENSMUST00000052854 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Gm12500-202ENSMUST00000186471 2428 ntBASIC18.58■□□□□ 0.56
Scn4aQ9ER60 Gm14371-201ENSMUST00000138925 1518 ntBASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Gm14460-201ENSMUST00000121511 639 ntBASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Scn4aQ9ER60 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms