Protein–RNA interactions for Protein: Q8R3Q6

Ccdc58, Coiled-coil domain-containing protein 58, mousemouse

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc58Q8R3Q6 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Ccdc58Q8R3Q6 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ccdc58Q8R3Q6 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ccdc58Q8R3Q6 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
Ccdc58Q8R3Q6 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Zbtb5-201ENSMUST00000055028 4316 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Pnkd-201ENSMUST00000027370 2937 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC12.58□□□□□ -0.4
Ccdc58Q8R3Q6 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm15173-201ENSMUST00000122049 433 ntBASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm16026-204ENSMUST00000162652 683 ntBASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm8584-201ENSMUST00000171982 758 ntBASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm25927-201ENSMUST00000175058 117 ntBASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm27459-201ENSMUST00000184860 107 ntBASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 AC102291.3-201ENSMUST00000226566 405 ntBASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 AC164565.1-201ENSMUST00000217520 1484 ntBASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC12.57□□□□□ -0.4
Ccdc58Q8R3Q6 Gm38102-201ENSMUST00000192791 1935 ntBASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Gm7002-201ENSMUST00000221386 2165 ntBASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Ccdc58Q8R3Q6 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 89.7 ms