Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
Trim56Q80VI1 AC135669.1-201ENSMUST00000213585 412 ntBASIC16.49■□□□□ 0.23
Trim56Q80VI1 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.49■□□□□ 0.23
Trim56Q80VI1 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trim56Q80VI1 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Art3-208ENSMUST00000121096 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trim56Q80VI1 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Hadhb-201ENSMUST00000026841 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Pmvk-202ENSMUST00000107410 652 ntTSL 5 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Gm2445-201ENSMUST00000182798 989 ntBASIC16.47■□□□□ 0.23
Trim56Q80VI1 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Prss41-201ENSMUST00000024926 1128 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Gm15889-202ENSMUST00000212669 2443 ntBASIC16.47■□□□□ 0.23
Trim56Q80VI1 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Moxd1-201ENSMUST00000095784 3090 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trim56Q80VI1 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trim56Q80VI1 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms