Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim28Q62318 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.05■□□□□ 0.48
Trim28Q62318 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Gm15770-201ENSMUST00000117498 584 ntBASIC18.05■□□□□ 0.48
Trim28Q62318 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC18.05■□□□□ 0.48
Trim28Q62318 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
Trim28Q62318 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Trim28Q62318 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC18.05■□□□□ 0.48
Trim28Q62318 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Isg20-201ENSMUST00000038142 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC18.05■□□□□ 0.48
Trim28Q62318 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
Trim28Q62318 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC18.05■□□□□ 0.48
Trim28Q62318 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim28Q62318 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 9130017K11Rik-202ENSMUST00000135670 3338 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Trim28Q62318 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC18.04■□□□□ 0.48
Trim28Q62318 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim28Q62318 Gm27486-201ENSMUST00000184923 80 ntBASIC18.04■□□□□ 0.48
Trim28Q62318 Gm18062-201ENSMUST00000208020 547 ntBASIC18.04■□□□□ 0.48
Trim28Q62318 Gm18055-201ENSMUST00000208254 547 ntBASIC18.04■□□□□ 0.48
Trim28Q62318 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim28Q62318 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC18.04■□□□□ 0.48
Trim28Q62318 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim28Q62318 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC18.04■□□□□ 0.48
Trim28Q62318 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trim28Q62318 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC18.03■□□□□ 0.48
Trim28Q62318 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trim28Q62318 Gm13886-201ENSMUST00000117876 1183 ntBASIC18.03■□□□□ 0.48
Trim28Q62318 Gm15824-201ENSMUST00000119516 955 ntBASIC18.03■□□□□ 0.48
Trim28Q62318 Gm29127-201ENSMUST00000188304 517 ntBASIC18.03■□□□□ 0.48
Trim28Q62318 Gm38144-201ENSMUST00000192790 465 ntBASIC18.03■□□□□ 0.48
Trim28Q62318 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC18.03■□□□□ 0.48
Trim28Q62318 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC18.03■□□□□ 0.48
Trim28Q62318 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Trim28Q62318 Gm6091-201ENSMUST00000098307 165 ntBASIC18.03■□□□□ 0.48
Trim28Q62318 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC18.03■□□□□ 0.48
Trim28Q62318 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trim28Q62318 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim28Q62318 Pde8a-201ENSMUST00000026672 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC18.02■□□□□ 0.48
Trim28Q62318 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC18.02■□□□□ 0.48
Trim28Q62318 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Trim28Q62318 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim28Q62318 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim28Q62318 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim28Q62318 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Trim28Q62318 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms