Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nr1h4Q60641 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Nr1h4Q60641 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nr1h4Q60641 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC13.34□□□□□ -0.27
Nr1h4Q60641 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Nr1h4Q60641 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Nr1h4Q60641 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Nr1h4Q60641 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Nr1h4Q60641 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Nr1h4Q60641 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 AC164629.2-201ENSMUST00000217916 270 ntBASIC13.33□□□□□ -0.28
Nr1h4Q60641 Gm18041-201ENSMUST00000218210 618 ntBASIC13.33□□□□□ -0.28
Nr1h4Q60641 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Dctn6-201ENSMUST00000033913 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Gm40377-201ENSMUST00000204604 2015 ntBASIC13.33□□□□□ -0.28
Nr1h4Q60641 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Nr1h4Q60641 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Kif3a-208ENSMUST00000173744 2257 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 AC154572.2-201ENSMUST00000225105 997 ntBASIC13.32□□□□□ -0.28
Nr1h4Q60641 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Nr1h4Q60641 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Olfr482-202ENSMUST00000217304 2612 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 AC115735.4-201ENSMUST00000227460 1944 ntBASIC13.31□□□□□ -0.28
Nr1h4Q60641 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Nr1h4Q60641 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Nr1h4Q60641 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms