Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim40Q3UWA4 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 AC119177.1-201ENSMUST00000227647 1332 ntBASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Gm7862-201ENSMUST00000121461 292 ntBASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Gm10729-202ENSMUST00000193403 1375 ntBASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 AC238940.1-201ENSMUST00000225106 1858 ntBASIC13.14□□□□□ -0.31
Trim40Q3UWA4 AC153366.2-201ENSMUST00000219461 1984 ntBASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Trim40Q3UWA4 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Celf1-202ENSMUST00000068726 7851 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Gm37230-201ENSMUST00000194491 818 ntBASIC13.13□□□□□ -0.31
Trim40Q3UWA4 AV026068-213ENSMUST00000223675 1171 ntBASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Trim40Q3UWA4 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 AC126549.2-201ENSMUST00000223997 1976 ntBASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Trim40Q3UWA4 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms