Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Mir7023-201ENSMUST00000185093 64 ntBASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Gm37714-201ENSMUST00000194742 342 ntBASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 AC124751.1-201ENSMUST00000222716 1408 ntBASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Upf3bQ3ULL6 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Gm38391-201ENSMUST00000191720 4069 ntBASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Kcnk6-201ENSMUST00000085818 4084 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Dnmt3b-204ENSMUST00000088976 4130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Gm4204-201ENSMUST00000110798 1231 ntBASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Upf3bQ3ULL6 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Gm15393-201ENSMUST00000120499 219 ntBASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 AC153872.1-201ENSMUST00000199539 128 ntBASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC14.97□□□□□ -0.01
Upf3bQ3ULL6 AC166574.6-201ENSMUST00000227889 1806 ntBASIC14.96□□□□□ -0.01
Upf3bQ3ULL6 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC14.96□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms