Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Gm8344-201ENSMUST00000119813 856 ntBASIC11.34□□□□□ -0.59
Cdx1P18111 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Cdx1P18111 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC11.34□□□□□ -0.59
Cdx1P18111 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC11.34□□□□□ -0.59
Cdx1P18111 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Zbed4-201ENSMUST00000041297 5425 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Lypd6-201ENSMUST00000053208 3620 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Ssr1-203ENSMUST00000225246 1825 ntBASIC11.34□□□□□ -0.59
Cdx1P18111 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
Cdx1P18111 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Cdx1P18111 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Cdx1P18111 AC126250.1-201ENSMUST00000228343 1768 ntBASIC11.33□□□□□ -0.59
Cdx1P18111 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.59
Cdx1P18111 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Cdx1P18111 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Cdx1P18111 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC11.33□□□□□ -0.6
Cdx1P18111 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Bcl2-201ENSMUST00000112751 7191 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cdx1P18111 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Cdx1P18111 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC11.33□□□□□ -0.6
Cdx1P18111 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC11.33□□□□□ -0.6
Cdx1P18111 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm2308-201ENSMUST00000166539 1004 ntBASIC11.33□□□□□ -0.6
Cdx1P18111 Gm5253-201ENSMUST00000187104 1025 ntBASIC11.33□□□□□ -0.6
Cdx1P18111 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC11.33□□□□□ -0.6
Cdx1P18111 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 AC174742.1-201ENSMUST00000218272 304 ntBASIC11.33□□□□□ -0.6
Cdx1P18111 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm10175-201ENSMUST00000086013 645 ntBASIC11.33□□□□□ -0.6
Cdx1P18111 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm20554-201ENSMUST00000177421 2352 ntBASIC11.33□□□□□ -0.6
Cdx1P18111 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC11.33□□□□□ -0.6
Cdx1P18111 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Cdx1P18111 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC11.33□□□□□ -0.6
Cdx1P18111 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC11.33□□□□□ -0.6
Cdx1P18111 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Cdx1P18111 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC11.32□□□□□ -0.6
Cdx1P18111 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC11.32□□□□□ -0.6
Cdx1P18111 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Gm26308-201ENSMUST00000157768 69 ntBASIC11.32□□□□□ -0.6
Cdx1P18111 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Cdx1P18111 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC11.32□□□□□ -0.6
Cdx1P18111 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 AC131709.1-201ENSMUST00000224731 1180 ntBASIC11.32□□□□□ -0.6
Cdx1P18111 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdx1P18111 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms