Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm22323-201ENSMUST00000103832 109 ntBASIC16.17■□□□□ 0.18
Col1a1P11087 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Gm7895-201ENSMUST00000187459 1173 ntBASIC16.17■□□□□ 0.18
Col1a1P11087 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC16.17■□□□□ 0.18
Col1a1P11087 AC134335.2-201ENSMUST00000227660 440 ntBASIC16.17■□□□□ 0.18
Col1a1P11087 Gm10146-201ENSMUST00000072739 309 ntBASIC16.17■□□□□ 0.18
Col1a1P11087 n-R5s195-201ENSMUST00000082891 119 ntBASIC16.17■□□□□ 0.18
Col1a1P11087 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC16.17■□□□□ 0.18
Col1a1P11087 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Col1a1P11087 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.17■□□□□ 0.18
Col1a1P11087 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC16.17■□□□□ 0.18
Col1a1P11087 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Col1a1P11087 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Col1a1P11087 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC16.16■□□□□ 0.18
Col1a1P11087 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC16.16■□□□□ 0.18
Col1a1P11087 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC16.16■□□□□ 0.18
Col1a1P11087 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Mir3547-201ENSMUST00000175461 88 ntBASIC16.16■□□□□ 0.18
Col1a1P11087 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC16.16■□□□□ 0.18
Col1a1P11087 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Col1a1P11087 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC16.16■□□□□ 0.18
Col1a1P11087 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC16.16■□□□□ 0.18
Col1a1P11087 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
Col1a1P11087 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Gm45684-201ENSMUST00000210244 1571 ntBASIC16.16■□□□□ 0.18
Col1a1P11087 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC16.16■□□□□ 0.18
Col1a1P11087 Gm37411-201ENSMUST00000194180 2282 ntBASIC16.16■□□□□ 0.18
Col1a1P11087 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Col1a1P11087 Gm16372-201ENSMUST00000073088 450 ntBASIC16.16■□□□□ 0.18
Col1a1P11087 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Col1a1P11087 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC16.15■□□□□ 0.18
Col1a1P11087 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Col1a1P11087 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC16.15■□□□□ 0.18
Col1a1P11087 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col1a1P11087 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col1a1P11087 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col1a1P11087 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col1a1P11087 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col1a1P11087 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Col1a1P11087 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC16.15■□□□□ 0.18
Col1a1P11087 Gm13123-201ENSMUST00000122173 492 ntBASIC16.15■□□□□ 0.18
Col1a1P11087 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC16.15■□□□□ 0.18
Col1a1P11087 Gm25261-201ENSMUST00000157416 134 ntBASIC16.15■□□□□ 0.18
Col1a1P11087 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Col1a1P11087 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC16.15■□□□□ 0.18
Col1a1P11087 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC16.15■□□□□ 0.18
Col1a1P11087 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC16.15■□□□□ 0.18
Col1a1P11087 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Gm10040-201ENSMUST00000080726 1662 ntBASIC16.15■□□□□ 0.18
Col1a1P11087 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Col1a1P11087 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Col1a1P11087 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Col1a1P11087 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC16.14■□□□□ 0.17
Col1a1P11087 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Col1a1P11087 Gm15336-201ENSMUST00000128894 1571 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Col1a1P11087 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms