Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Col3a1P08121 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Gm13392-201ENSMUST00000117708 150 ntBASIC16.51■□□□□ 0.23
Col3a1P08121 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Col3a1P08121 Tldc2-202ENSMUST00000166140 639 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Col3a1P08121 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC16.51■□□□□ 0.23
Col3a1P08121 Gm37424-201ENSMUST00000191727 561 ntBASIC16.51■□□□□ 0.23
Col3a1P08121 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC16.51■□□□□ 0.23
Col3a1P08121 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
Col3a1P08121 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC16.51■□□□□ 0.23
Col3a1P08121 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Col3a1P08121 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Col3a1P08121 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Col3a1P08121 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Col3a1P08121 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC16.5■□□□□ 0.23
Col3a1P08121 Gm27514-201ENSMUST00000183692 110 ntBASIC16.5■□□□□ 0.23
Col3a1P08121 Gm27331-201ENSMUST00000183705 60 ntBASIC16.5■□□□□ 0.23
Col3a1P08121 Itm2b-204ENSMUST00000228637 783 ntBASIC16.5■□□□□ 0.23
Col3a1P08121 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Rn7sk-201ENSMUST00000083103 331 ntBASIC16.5■□□□□ 0.23
Col3a1P08121 Gm26315-201ENSMUST00000083890 321 ntBASIC16.5■□□□□ 0.23
Col3a1P08121 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
Col3a1P08121 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Col3a1P08121 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC16.5■□□□□ 0.23
Col3a1P08121 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Gm7553-201ENSMUST00000185805 1426 ntBASIC16.5■□□□□ 0.23
Col3a1P08121 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Col3a1P08121 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Col3a1P08121 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
Col3a1P08121 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Col3a1P08121 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
Col3a1P08121 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC16.49■□□□□ 0.23
Col3a1P08121 Gm27731-201ENSMUST00000185192 107 ntBASIC16.49■□□□□ 0.23
Col3a1P08121 Gm29649-201ENSMUST00000185649 419 ntBASIC16.49■□□□□ 0.23
Col3a1P08121 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC16.49■□□□□ 0.23
Col3a1P08121 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Col3a1P08121 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
Col3a1P08121 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Col3a1P08121 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Col3a1P08121 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC16.49■□□□□ 0.23
Col3a1P08121 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Gm22331-201ENSMUST00000158066 136 ntBASIC16.48■□□□□ 0.23
Col3a1P08121 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC16.48■□□□□ 0.23
Col3a1P08121 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Col3a1P08121 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms