Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.42
Col5a1O88207 Gm13886-201ENSMUST00000117876 1183 ntBASIC12.44□□□□□ -0.42
Col5a1O88207 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC12.44□□□□□ -0.42
Col5a1O88207 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Col5a1O88207 AC155237.1-201ENSMUST00000226196 1279 ntBASIC12.44□□□□□ -0.42
Col5a1O88207 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.44□□□□□ -0.42
Col5a1O88207 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Col5a1O88207 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Mylk2-201ENSMUST00000028970 2951 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC12.43□□□□□ -0.42
Col5a1O88207 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC12.43□□□□□ -0.42
Col5a1O88207 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
Col5a1O88207 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC12.43□□□□□ -0.42
Col5a1O88207 A3galt2-202ENSMUST00000106077 2114 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Col5a1O88207 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Gm12241-201ENSMUST00000118330 726 ntBASIC12.43□□□□□ -0.42
Col5a1O88207 Gm2991-201ENSMUST00000173338 480 ntBASIC12.43□□□□□ -0.42
Col5a1O88207 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC12.43□□□□□ -0.42
Col5a1O88207 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC12.43□□□□□ -0.42
Col5a1O88207 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Col5a1O88207 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Col5a1O88207 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.43□□□□□ -0.42
Col5a1O88207 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Col5a1O88207 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC12.43□□□□□ -0.42
Col5a1O88207 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Col5a1O88207 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC12.43□□□□□ -0.42
Col5a1O88207 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Col5a1O88207 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.42□□□□□ -0.42
Col5a1O88207 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC12.42□□□□□ -0.42
Col5a1O88207 Gm1335-201ENSMUST00000121653 386 ntBASIC12.42□□□□□ -0.42
Col5a1O88207 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC12.42□□□□□ -0.42
Col5a1O88207 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.42□□□□□ -0.42
Col5a1O88207 Gm9368-201ENSMUST00000219348 831 ntBASIC12.42□□□□□ -0.42
Col5a1O88207 AC131997.1-201ENSMUST00000228611 1229 ntBASIC12.42□□□□□ -0.42
Col5a1O88207 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Gm7324-201ENSMUST00000094051 1647 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Col5a1O88207 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC12.42□□□□□ -0.42
Col5a1O88207 Gm21451-201ENSMUST00000111062 2775 ntBASIC12.42□□□□□ -0.42
Col5a1O88207 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC12.42□□□□□ -0.42
Col5a1O88207 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC12.42□□□□□ -0.42
Col5a1O88207 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Col5a1O88207 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Col5a1O88207 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Col5a1O88207 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Col5a1O88207 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Col5a1O88207 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Gm7118-201ENSMUST00000200167 1003 ntBASIC12.41□□□□□ -0.42
Col5a1O88207 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Col5a1O88207 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Col5a1O88207 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Col5a1O88207 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Col5a1O88207 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC12.41□□□□□ -0.42
Col5a1O88207 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms