Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC13.68□□□□□ -0.22
Chd3B1AR17 Ube2i-211ENSMUST00000173713 890 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Mir7654-201ENSMUST00000185082 70 ntBASIC13.68□□□□□ -0.22
Chd3B1AR17 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC13.68□□□□□ -0.22
Chd3B1AR17 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC13.68□□□□□ -0.22
Chd3B1AR17 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Gm12620-201ENSMUST00000119791 1986 ntBASIC13.68□□□□□ -0.22
Chd3B1AR17 Gm12612-201ENSMUST00000140182 1986 ntBASIC13.68□□□□□ -0.22
Chd3B1AR17 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Chd3B1AR17 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Mff-201ENSMUST00000073025 1706 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Gh-201ENSMUST00000103071 862 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Gm43094-201ENSMUST00000196549 921 ntBASIC13.67□□□□□ -0.22
Chd3B1AR17 Gm18307-201ENSMUST00000206864 949 ntBASIC13.67□□□□□ -0.22
Chd3B1AR17 Gm15823-201ENSMUST00000064305 670 ntBASIC13.67□□□□□ -0.22
Chd3B1AR17 Ap2s1-201ENSMUST00000086112 836 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Gm10710-201ENSMUST00000047876 3971 ntBASIC13.67□□□□□ -0.22
Chd3B1AR17 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Chd3B1AR17 AC162801.1-201ENSMUST00000220612 198 ntBASIC13.67□□□□□ -0.22
Chd3B1AR17 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Chd3B1AR17 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Chd3B1AR17 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.66□□□□□ -0.22
Chd3B1AR17 Gm15770-201ENSMUST00000117498 584 ntBASIC13.66□□□□□ -0.22
Chd3B1AR17 Gm6745-201ENSMUST00000199216 526 ntBASIC13.66□□□□□ -0.22
Chd3B1AR17 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC13.66□□□□□ -0.22
Chd3B1AR17 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC13.66□□□□□ -0.22
Chd3B1AR17 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Chd3B1AR17 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Chd3B1AR17 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC13.65□□□□□ -0.22
Chd3B1AR17 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Chd3B1AR17 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Chd3B1AR17 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC13.65□□□□□ -0.22
Chd3B1AR17 AC168058.1-201ENSMUST00000219521 2282 ntBASIC13.65□□□□□ -0.22
Chd3B1AR17 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Chd3B1AR17 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC13.65□□□□□ -0.22
Chd3B1AR17 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Chd3B1AR17 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC13.65□□□□□ -0.22
Chd3B1AR17 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 70.4 ms