Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ushbp1Q8R370 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 AC131690.1-201ENSMUST00000218406 374 ntBASIC15.72■□□□□ 0.11
Ushbp1Q8R370 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 BC001981-202ENSMUST00000191393 1545 ntBASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Nt5c3b-201ENSMUST00000092688 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ushbp1Q8R370 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Gm6222-201ENSMUST00000120787 396 ntBASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Gm18187-201ENSMUST00000196476 984 ntBASIC15.71■□□□□ 0.11
Ushbp1Q8R370 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC15.71■□□□□ 0.11
Ushbp1Q8R370 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ushbp1Q8R370 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ushbp1Q8R370 Gm15222-202ENSMUST00000228667 1726 ntBASIC15.71■□□□□ 0.1
Ushbp1Q8R370 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Ushbp1Q8R370 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
Ushbp1Q8R370 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 AA619741-201ENSMUST00000195095 646 ntBASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Gm6218-201ENSMUST00000219812 628 ntBASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Ushbp1Q8R370 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC15.69■□□□□ 0.1
Ushbp1Q8R370 Gm12859-201ENSMUST00000117834 427 ntBASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms