Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm6973-201ENSMUST00000117080 721 ntBASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm13464-201ENSMUST00000119418 935 ntBASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm5779-201ENSMUST00000218467 910 ntBASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 AC131710.1-201ENSMUST00000228336 990 ntBASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gpsm1-204ENSMUST00000114134 2043 ntTSL 3 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Angel2-203ENSMUST00000110899 3673 ntTSL 5 BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Sh3rf1Q69ZI1 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Gm15593-201ENSMUST00000122085 1008 ntBASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Gm27622-201ENSMUST00000183779 60 ntBASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 AC166341.4-201ENSMUST00000220625 123 ntBASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC14.24□□□□□ -0.13
Sh3rf1Q69ZI1 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.23□□□□□ -0.13
Sh3rf1Q69ZI1 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms