Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm44616-201ENSMUST00000206417 1732 ntBASIC14.42□□□□□ -0.1
Sox9Q04887 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Sox9Q04887 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Gm8213-201ENSMUST00000118191 441 ntBASIC14.42□□□□□ -0.1
Sox9Q04887 Gm13385-201ENSMUST00000121089 220 ntBASIC14.42□□□□□ -0.1
Sox9Q04887 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC14.42□□□□□ -0.1
Sox9Q04887 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.42□□□□□ -0.1
Sox9Q04887 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC14.42□□□□□ -0.1
Sox9Q04887 Ighv1-62-201ENSMUST00000193406 350 ntBASIC14.42□□□□□ -0.1
Sox9Q04887 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.42□□□□□ -0.1
Sox9Q04887 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.42□□□□□ -0.1
Sox9Q04887 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC14.42□□□□□ -0.1
Sox9Q04887 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Sox9Q04887 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.41□□□□□ -0.1
Sox9Q04887 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
Sox9Q04887 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC14.41□□□□□ -0.1
Sox9Q04887 Gm10156-201ENSMUST00000122364 462 ntBASIC14.41□□□□□ -0.1
Sox9Q04887 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC14.41□□□□□ -0.1
Sox9Q04887 Gm6152-201ENSMUST00000151704 340 ntBASIC14.41□□□□□ -0.1
Sox9Q04887 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Gm4271-201ENSMUST00000174444 973 ntBASIC14.41□□□□□ -0.1
Sox9Q04887 Gm24420-201ENSMUST00000176676 59 ntBASIC14.41□□□□□ -0.1
Sox9Q04887 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Gm27341-201ENSMUST00000183570 106 ntBASIC14.41□□□□□ -0.1
Sox9Q04887 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Sox9Q04887 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Sox9Q04887 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 AC113441.2-201ENSMUST00000221538 1468 ntBASIC14.41□□□□□ -0.1
Sox9Q04887 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Sox9Q04887 Gm44207-201ENSMUST00000204568 1424 ntBASIC14.41□□□□□ -0.1
Sox9Q04887 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Sox9Q04887 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC14.4□□□□□ -0.1
Sox9Q04887 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Sox9Q04887 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Sox9Q04887 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC14.4□□□□□ -0.1
Sox9Q04887 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC14.4□□□□□ -0.1
Sox9Q04887 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Gm29396-201ENSMUST00000185659 716 ntBASIC14.4□□□□□ -0.1
Sox9Q04887 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC14.4□□□□□ -0.1
Sox9Q04887 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC14.4□□□□□ -0.1
Sox9Q04887 Gm18027-201ENSMUST00000218947 619 ntBASIC14.4□□□□□ -0.1
Sox9Q04887 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC14.4□□□□□ -0.1
Sox9Q04887 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Sox9Q04887 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
Sox9Q04887 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Sox9Q04887 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Sox9Q04887 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms