Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC21.22■□□□□ 0.99
Cux1P53564 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Cux1P53564 Gm13786-201ENSMUST00000122371 333 ntBASIC21.22■□□□□ 0.99
Cux1P53564 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
Cux1P53564 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC21.22■□□□□ 0.99
Cux1P53564 Gm29396-201ENSMUST00000185659 716 ntBASIC21.22■□□□□ 0.99
Cux1P53564 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC21.22■□□□□ 0.99
Cux1P53564 Gm6334-201ENSMUST00000207083 228 ntBASIC21.22■□□□□ 0.99
Cux1P53564 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC21.22■□□□□ 0.99
Cux1P53564 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Cux1P53564 Gm3695-201ENSMUST00000087222 1009 ntBASIC21.22■□□□□ 0.99
Cux1P53564 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC21.22■□□□□ 0.99
Cux1P53564 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC21.22■□□□□ 0.99
Cux1P53564 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Cux1P53564 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC21.21■□□□□ 0.99
Cux1P53564 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Cux1P53564 Gm14608-201ENSMUST00000120030 1553 ntBASIC21.21■□□□□ 0.99
Cux1P53564 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Cux1P53564 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC21.21■□□□□ 0.99
Cux1P53564 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Gm38341-201ENSMUST00000195357 515 ntBASIC21.21■□□□□ 0.99
Cux1P53564 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Cux1P53564 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
Cux1P53564 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC21.21■□□□□ 0.99
Cux1P53564 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Cux1P53564 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Cux1P53564 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC21.2■□□□□ 0.98
Cux1P53564 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC21.2■□□□□ 0.98
Cux1P53564 Gm7895-201ENSMUST00000187459 1173 ntBASIC21.2■□□□□ 0.98
Cux1P53564 Gm44985-201ENSMUST00000206202 1016 ntBASIC21.2■□□□□ 0.98
Cux1P53564 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC21.2■□□□□ 0.98
Cux1P53564 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Cux1P53564 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Cux1P53564 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
Cux1P53564 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC21.19■□□□□ 0.98
Cux1P53564 Gm9431-201ENSMUST00000119765 1051 ntBASIC21.19■□□□□ 0.98
Cux1P53564 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC21.19■□□□□ 0.98
Cux1P53564 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC21.19■□□□□ 0.98
Cux1P53564 Gm38266-201ENSMUST00000194931 421 ntBASIC21.19■□□□□ 0.98
Cux1P53564 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC21.19■□□□□ 0.98
Cux1P53564 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC21.19■□□□□ 0.98
Cux1P53564 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Cux1P53564 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC21.19■□□□□ 0.98
Cux1P53564 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Gm13342-201ENSMUST00000121055 207 ntBASIC21.19■□□□□ 0.98
Cux1P53564 Gm26083-201ENSMUST00000157904 193 ntBASIC21.19■□□□□ 0.98
Cux1P53564 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Cux1P53564 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC21.19■□□□□ 0.98
Cux1P53564 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
Cux1P53564 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Cux1P53564 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cux1P53564 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Cux1P53564 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms