Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
Col1a1P11087 Gm9856-201ENSMUST00000217077 2578 ntBASIC16.2■□□□□ 0.18
Col1a1P11087 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Col1a1P11087 Alkbh4-201ENSMUST00000041100 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Gm13369-201ENSMUST00000119442 987 ntBASIC16.2■□□□□ 0.18
Col1a1P11087 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC16.2■□□□□ 0.18
Col1a1P11087 Gm16379-201ENSMUST00000161469 348 ntBASIC16.2■□□□□ 0.18
Col1a1P11087 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC16.2■□□□□ 0.18
Col1a1P11087 Gm8762-201ENSMUST00000193486 339 ntBASIC16.2■□□□□ 0.18
Col1a1P11087 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC16.2■□□□□ 0.18
Col1a1P11087 Gm45865-201ENSMUST00000211815 945 ntBASIC16.2■□□□□ 0.18
Col1a1P11087 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC16.2■□□□□ 0.18
Col1a1P11087 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Col1a1P11087 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC16.2■□□□□ 0.18
Col1a1P11087 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC16.2■□□□□ 0.18
Col1a1P11087 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Tmem181b-ps-203ENSMUST00000188746 1626 ntTSL 5 BASIC16.2■□□□□ 0.18
Col1a1P11087 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.2■□□□□ 0.18
Col1a1P11087 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col1a1P11087 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col1a1P11087 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Gm12537-201ENSMUST00000119266 1002 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Gm12070-201ENSMUST00000119551 1002 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Gm12671-201ENSMUST00000119978 1002 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Gm13292-201ENSMUST00000120014 1000 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Gm12403-201ENSMUST00000121384 959 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Drap1-209ENSMUST00000136579 734 ntTSL 2 BASIC16.19■□□□□ 0.18
Col1a1P11087 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Gm10359-201ENSMUST00000180167 1002 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Gm12033-201ENSMUST00000180654 1002 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Gm5559-201ENSMUST00000180755 1002 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Gm4335-201ENSMUST00000182581 1004 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 AC131997.1-201ENSMUST00000228611 1229 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col1a1P11087 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
Col1a1P11087 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.19■□□□□ 0.18
Col1a1P11087 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Col1a1P11087 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col1a1P11087 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC16.19■□□□□ 0.18
Col1a1P11087 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC16.19■□□□□ 0.18
Col1a1P11087 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col1a1P11087 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC16.18■□□□□ 0.18
Col1a1P11087 Mir877-201ENSMUST00000104738 85 ntBASIC16.18■□□□□ 0.18
Col1a1P11087 Gm13886-201ENSMUST00000117876 1183 ntBASIC16.18■□□□□ 0.18
Col1a1P11087 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
Col1a1P11087 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC16.18■□□□□ 0.18
Col1a1P11087 Gm2445-201ENSMUST00000182798 989 ntBASIC16.18■□□□□ 0.18
Col1a1P11087 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC16.18■□□□□ 0.18
Col1a1P11087 Gm6334-201ENSMUST00000207083 228 ntBASIC16.18■□□□□ 0.18
Col1a1P11087 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC16.18■□□□□ 0.18
Col1a1P11087 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Col1a1P11087 AC093022.1-201ENSMUST00000226949 1072 ntBASIC16.18■□□□□ 0.18
Col1a1P11087 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Col1a1P11087 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC16.18■□□□□ 0.18
Col1a1P11087 H2afv-201ENSMUST00000093346 519 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC16.18■□□□□ 0.18
Col1a1P11087 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC16.18■□□□□ 0.18
Col1a1P11087 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col1a1P11087 5830462O15Rik-201ENSMUST00000214603 1655 ntBASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms