Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
Cops4O88544 Capns2-201ENSMUST00000104947 1005 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
Cops4O88544 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC12.96□□□□□ -0.33
Cops4O88544 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC12.96□□□□□ -0.33
Cops4O88544 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cops4O88544 Mir5126-201ENSMUST00000175513 77 ntBASIC12.96□□□□□ -0.33
Cops4O88544 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Cops4O88544 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC12.96□□□□□ -0.33
Cops4O88544 Gm6944-201ENSMUST00000182449 1006 ntBASIC12.96□□□□□ -0.33
Cops4O88544 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC12.96□□□□□ -0.33
Cops4O88544 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
Cops4O88544 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
Cops4O88544 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Cops4O88544 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
Cops4O88544 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
Cops4O88544 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC12.96□□□□□ -0.33
Cops4O88544 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC12.96□□□□□ -0.33
Cops4O88544 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Cops4O88544 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cops4O88544 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cops4O88544 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cops4O88544 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
Cops4O88544 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
Cops4O88544 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cops4O88544 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
Cops4O88544 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC12.96□□□□□ -0.34
Cops4O88544 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
Cops4O88544 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 Heg1-201ENSMUST00000126532 6714 ntAPPRIS P5 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Gm8096-201ENSMUST00000209921 1591 ntBASIC12.95□□□□□ -0.34
Cops4O88544 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC12.95□□□□□ -0.34
Cops4O88544 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 AC154595.3-201ENSMUST00000224579 384 ntBASIC12.95□□□□□ -0.34
Cops4O88544 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
Cops4O88544 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
Cops4O88544 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Gm37133-201ENSMUST00000192705 1922 ntBASIC12.95□□□□□ -0.34
Cops4O88544 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC12.95□□□□□ -0.34
Cops4O88544 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Cops4O88544 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC12.94□□□□□ -0.34
Cops4O88544 Gm11873-201ENSMUST00000117877 1304 ntBASIC12.94□□□□□ -0.34
Cops4O88544 Gm13294-201ENSMUST00000121757 1330 ntBASIC12.94□□□□□ -0.34
Cops4O88544 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Zfp707-202ENSMUST00000109967 1703 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Cops4O88544 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Cops4O88544 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Cops4O88544 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC12.94□□□□□ -0.34
Cops4O88544 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC12.94□□□□□ -0.34
Cops4O88544 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC12.94□□□□□ -0.34
Cops4O88544 Gm27628-201ENSMUST00000184911 107 ntBASIC12.94□□□□□ -0.34
Cops4O88544 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC12.94□□□□□ -0.34
Cops4O88544 Gm9449-201ENSMUST00000207265 1011 ntBASIC12.94□□□□□ -0.34
Cops4O88544 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC12.94□□□□□ -0.34
Cops4O88544 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Cops4O88544 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Cops4O88544 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC12.94□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms