Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm12626-201ENSMUST00000117339 1983 ntBASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm12623-201ENSMUST00000119849 1983 ntBASIC11.61□□□□□ -0.55
Hmgb3O54879 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Hmgb3O54879 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Hmgb3O54879 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Hmgb3O54879 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Erbin-201ENSMUST00000022222 6369 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Gm38094-201ENSMUST00000195864 2978 ntBASIC11.6□□□□□ -0.55
Hmgb3O54879 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Gm5253-201ENSMUST00000187104 1025 ntBASIC11.6□□□□□ -0.55
Hmgb3O54879 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 AC153889.1-201ENSMUST00000219257 330 ntBASIC11.6□□□□□ -0.55
Hmgb3O54879 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Grk4-201ENSMUST00000001112 2408 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Pcdh11x-202ENSMUST00000113358 8607 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Hmgb3O54879 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Hmgb3O54879 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Tcf21-202ENSMUST00000218002 1788 ntBASIC11.59□□□□□ -0.55
Hmgb3O54879 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Ralgps2-214ENSMUST00000191605 2958 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Slco5a1-202ENSMUST00000115403 8509 ntAPPRIS P2 TSL 5 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC11.59□□□□□ -0.55
Hmgb3O54879 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Gm11780-201ENSMUST00000136880 516 ntBASIC11.59□□□□□ -0.55
Hmgb3O54879 Gm18489-201ENSMUST00000172565 551 ntBASIC11.59□□□□□ -0.55
Hmgb3O54879 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Gm9682-201ENSMUST00000197505 556 ntBASIC11.59□□□□□ -0.55
Hmgb3O54879 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
Hmgb3O54879 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 75.9 ms