Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Skap1-206ENSMUST00000107663 742 ntTSL 3 BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Gm13996-201ENSMUST00000118456 430 ntBASIC18.69■□□□□ 0.58
Scn4aQ9ER60 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Mir6546-201ENSMUST00000184460 62 ntBASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Scn4aQ9ER60 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Rab30-202ENSMUST00000107179 1304 ntTSL 5 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Bhmt2-201ENSMUST00000015941 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Gm3830-201ENSMUST00000185540 1715 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.68■□□□□ 0.58
Scn4aQ9ER60 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Gm18730-201ENSMUST00000218038 343 ntBASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Gm8712-201ENSMUST00000221090 701 ntBASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Gm43399-201ENSMUST00000202546 2374 ntBASIC18.67■□□□□ 0.58
Scn4aQ9ER60 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Apmap-201ENSMUST00000046399 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Higd1a-205ENSMUST00000215007 1980 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Gm37666-201ENSMUST00000194110 866 ntBASIC18.67■□□□□ 0.58
Scn4aQ9ER60 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Scn4aQ9ER60 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Fam219a-201ENSMUST00000108049 3296 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Gm26788-201ENSMUST00000181692 1750 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Gm9062-201ENSMUST00000117712 727 ntBASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Gm8492-201ENSMUST00000182375 987 ntBASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Ip6k2-202ENSMUST00000192028 1199 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 AC122305.4-201ENSMUST00000216159 1206 ntBASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Scn4aQ9ER60 Prob1-201ENSMUST00000097619 3021 ntBASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Scn4aQ9ER60 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms