Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Usp40Q8BWR4 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Gpc5-201ENSMUST00000022707 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Adal-204ENSMUST00000110665 2356 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Usp40Q8BWR4 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Mir1982-201ENSMUST00000157368 74 ntBASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Ptprm-202ENSMUST00000223982 4802 ntAPPRIS P2 BASIC19.16■□□□□ 0.66
Usp40Q8BWR4 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Brsk2-204ENSMUST00000105989 2149 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Gm27486-201ENSMUST00000184923 80 ntBASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Gm7561-201ENSMUST00000211203 886 ntBASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Usp40Q8BWR4 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Usp40Q8BWR4 Gm37297-201ENSMUST00000192974 2384 ntBASIC19.14■□□□□ 0.66
Usp40Q8BWR4 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Mup-ps23-201ENSMUST00000118063 630 ntBASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Gm11814-201ENSMUST00000119515 929 ntBASIC19.14■□□□□ 0.65
Usp40Q8BWR4 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Gm8835-201ENSMUST00000173096 1169 ntBASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 AY702102-202ENSMUST00000194651 1173 ntBASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 AC153962.4-201ENSMUST00000217878 242 ntBASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Usp40Q8BWR4 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 62.1 ms