Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trim56Q80VI1 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm45605-201ENSMUST00000210265 4269 ntBASIC16.55■□□□□ 0.24
Trim56Q80VI1 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm11557-201ENSMUST00000120200 1008 ntBASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm13385-201ENSMUST00000121089 220 ntBASIC16.55■□□□□ 0.24
Trim56Q80VI1 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm8927-201ENSMUST00000181978 981 ntBASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC16.55■□□□□ 0.24
Trim56Q80VI1 AC165157.4-201ENSMUST00000220587 139 ntBASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm3222-201ENSMUST00000071282 990 ntBASIC16.55■□□□□ 0.24
Trim56Q80VI1 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Arrdc5-201ENSMUST00000097303 1054 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Adam11-201ENSMUST00000068150 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim56Q80VI1 Tspan32-206ENSMUST00000105925 1376 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Gm28760-201ENSMUST00000185995 736 ntBASIC16.54■□□□□ 0.24
Trim56Q80VI1 Gm29741-201ENSMUST00000192667 421 ntBASIC16.54■□□□□ 0.24
Trim56Q80VI1 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
Trim56Q80VI1 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Gm31326-201ENSMUST00000191856 1048 ntBASIC16.53■□□□□ 0.24
Trim56Q80VI1 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 AC139580.1-202ENSMUST00000223574 928 ntBASIC16.53■□□□□ 0.24
Trim56Q80VI1 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Ppt2-209ENSMUST00000171121 1710 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim56Q80VI1 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim56Q80VI1 Gm21451-201ENSMUST00000111062 2775 ntBASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms