Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim28Q62318 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim28Q62318 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Trim28Q62318 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Trim28Q62318 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Trim28Q62318 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Gm15371-201ENSMUST00000117057 784 ntBASIC18.11■□□□□ 0.49
Trim28Q62318 Gm12390-201ENSMUST00000117897 397 ntBASIC18.11■□□□□ 0.49
Trim28Q62318 Gm11814-201ENSMUST00000119515 929 ntBASIC18.11■□□□□ 0.49
Trim28Q62318 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Apoc3-203ENSMUST00000121916 709 ntTSL 2 BASIC18.11■□□□□ 0.49
Trim28Q62318 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Gm17870-201ENSMUST00000219489 1174 ntBASIC18.11■□□□□ 0.49
Trim28Q62318 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Gm13730-201ENSMUST00000121036 1462 ntBASIC18.11■□□□□ 0.49
Trim28Q62318 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC18.11■□□□□ 0.49
Trim28Q62318 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Mmp14-206ENSMUST00000225641 3238 ntBASIC18.11■□□□□ 0.49
Trim28Q62318 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim28Q62318 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim28Q62318 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
Trim28Q62318 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Trim28Q62318 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Trim28Q62318 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC18.1■□□□□ 0.49
Trim28Q62318 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC18.1■□□□□ 0.49
Trim28Q62318 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC18.1■□□□□ 0.49
Trim28Q62318 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Trim28Q62318 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC18.1■□□□□ 0.49
Trim28Q62318 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC18.1■□□□□ 0.49
Trim28Q62318 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim28Q62318 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC18.1■□□□□ 0.49
Trim28Q62318 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC18.1■□□□□ 0.49
Trim28Q62318 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Trim28Q62318 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim28Q62318 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Rtn3-203ENSMUST00000088169 1709 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim28Q62318 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Trim28Q62318 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Trim28Q62318 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 AC114008.2-201ENSMUST00000227699 1347 ntBASIC18.09■□□□□ 0.49
Trim28Q62318 Atp6ap1-201ENSMUST00000019231 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Gm5687-201ENSMUST00000118252 640 ntBASIC18.09■□□□□ 0.49
Trim28Q62318 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Gm24196-201ENSMUST00000179161 110 ntBASIC18.09■□□□□ 0.49
Trim28Q62318 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC18.09■□□□□ 0.49
Trim28Q62318 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC18.09■□□□□ 0.49
Trim28Q62318 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Trim28Q62318 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Lrrc34-201ENSMUST00000029252 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Mmp21-201ENSMUST00000033278 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Trim28Q62318 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim28Q62318 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Trim28Q62318 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms