Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Lhx1-201ENSMUST00000018842 3846 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Gm44291-201ENSMUST00000203102 2865 ntBASIC16.54■□□□□ 0.24
Limch1Q3UH68 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Limch1Q3UH68 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 AC115735.4-201ENSMUST00000227460 1944 ntBASIC16.53■□□□□ 0.24
Limch1Q3UH68 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Gm6539-201ENSMUST00000119157 1064 ntBASIC16.53■□□□□ 0.24
Limch1Q3UH68 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC16.53■□□□□ 0.24
Limch1Q3UH68 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Limch1Q3UH68 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Gm13823-201ENSMUST00000119930 345 ntBASIC16.52■□□□□ 0.24
Limch1Q3UH68 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Gm27680-201ENSMUST00000184192 160 ntBASIC16.52■□□□□ 0.24
Limch1Q3UH68 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Gm7730-201ENSMUST00000212486 454 ntBASIC16.52■□□□□ 0.24
Limch1Q3UH68 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Limch1Q3UH68 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
Limch1Q3UH68 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Limch1Q3UH68 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Limch1Q3UH68 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Limch1Q3UH68 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Limch1Q3UH68 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms