Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Col28a1Q2UY11 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Gm9182-201ENSMUST00000217829 639 ntBASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Vars-201ENSMUST00000087315 4137 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Gm42928-201ENSMUST00000197338 3339 ntBASIC13.66□□□□□ -0.22
Col28a1Q2UY11 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Sirt4-202ENSMUST00000112067 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Il15-201ENSMUST00000034148 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.65□□□□□ -0.22
Col28a1Q2UY11 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Col28a1Q2UY11 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Akt2-ps-201ENSMUST00000120718 1449 ntBASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col28a1Q2UY11 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms