Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msx3P70354 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
Msx3P70354 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Msx3P70354 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msx3P70354 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msx3P70354 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Msx3P70354 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msx3P70354 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msx3P70354 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msx3P70354 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Msx3P70354 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC14.46□□□□□ -0.09
Msx3P70354 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC14.46□□□□□ -0.09
Msx3P70354 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Msx3P70354 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
Msx3P70354 Amdhd2-201ENSMUST00000040735 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.46□□□□□ -0.09
Msx3P70354 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Msx3P70354 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Gm2445-201ENSMUST00000182798 989 ntBASIC14.46□□□□□ -0.09
Msx3P70354 Gm10253-201ENSMUST00000194270 940 ntBASIC14.46□□□□□ -0.09
Msx3P70354 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Msx3P70354 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Msx3P70354 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
Msx3P70354 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msx3P70354 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msx3P70354 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msx3P70354 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.46□□□□□ -0.1
Msx3P70354 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.1
Msx3P70354 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.1
Msx3P70354 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Msx3P70354 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Erc1-207ENSMUST00000183911 3865 ntTSL 5 BASIC14.45□□□□□ -0.1
Msx3P70354 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Msx3P70354 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC14.45□□□□□ -0.1
Msx3P70354 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC14.45□□□□□ -0.1
Msx3P70354 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC14.45□□□□□ -0.1
Msx3P70354 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC14.45□□□□□ -0.1
Msx3P70354 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 AC090659.2-201ENSMUST00000225378 1186 ntBASIC14.45□□□□□ -0.1
Msx3P70354 CT030704.2-201ENSMUST00000228887 494 ntBASIC14.45□□□□□ -0.1
Msx3P70354 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Gm42872-201ENSMUST00000200026 1967 ntBASIC14.45□□□□□ -0.1
Msx3P70354 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Tpk1-201ENSMUST00000067888 2671 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC14.45□□□□□ -0.1
Msx3P70354 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Msx3P70354 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.44□□□□□ -0.1
Msx3P70354 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Msx3P70354 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Msx3P70354 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC14.44□□□□□ -0.1
Msx3P70354 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Msx3P70354 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Msx3P70354 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
Msx3P70354 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Msx3P70354 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Msx3P70354 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Nxpe5-202ENSMUST00000159798 2568 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Msx3P70354 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Msx3P70354 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Msx3P70354 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 68.1 ms