Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Mir6956-201ENSMUST00000183598 62 ntBASIC12.82□□□□□ -0.36
Cdh11P55288 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC12.82□□□□□ -0.36
Cdh11P55288 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdh11P55288 Gm43474-201ENSMUST00000196415 774 ntBASIC12.82□□□□□ -0.36
Cdh11P55288 Gm44872-201ENSMUST00000207864 420 ntBASIC12.82□□□□□ -0.36
Cdh11P55288 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC12.82□□□□□ -0.36
Cdh11P55288 AC159114.1-201ENSMUST00000220349 266 ntBASIC12.82□□□□□ -0.36
Cdh11P55288 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC12.82□□□□□ -0.36
Cdh11P55288 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC12.82□□□□□ -0.36
Cdh11P55288 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Cdh11P55288 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Cdh11P55288 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC12.82□□□□□ -0.36
Cdh11P55288 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Cdh11P55288 Gm11405-201ENSMUST00000118689 1556 ntBASIC12.81□□□□□ -0.36
Cdh11P55288 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 CT025610.1-201ENSMUST00000224552 1786 ntBASIC12.81□□□□□ -0.36
Cdh11P55288 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Cdh11P55288 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC12.81□□□□□ -0.36
Cdh11P55288 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Cdh11P55288 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Cdh11P55288 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC12.81□□□□□ -0.36
Cdh11P55288 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Cdh11P55288 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC12.81□□□□□ -0.36
Cdh11P55288 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC12.81□□□□□ -0.36
Cdh11P55288 Auts2-212ENSMUST00000178555 309 ntBASIC12.81□□□□□ -0.36
Cdh11P55288 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC12.81□□□□□ -0.36
Cdh11P55288 Gm18057-201ENSMUST00000208220 503 ntBASIC12.81□□□□□ -0.36
Cdh11P55288 AC139382.1-201ENSMUST00000221402 498 ntBASIC12.81□□□□□ -0.36
Cdh11P55288 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
Cdh11P55288 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
Cdh11P55288 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Cdh11P55288 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC12.81□□□□□ -0.36
Cdh11P55288 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Cdh11P55288 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
Cdh11P55288 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Gm6198-201ENSMUST00000191337 2929 ntBASIC12.81□□□□□ -0.36
Cdh11P55288 Gm18244-201ENSMUST00000219747 1566 ntBASIC12.81□□□□□ -0.36
Cdh11P55288 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Rarg-201ENSMUST00000043172 2953 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC12.81□□□□□ -0.36
Cdh11P55288 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Cdh11P55288 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Cdh11P55288 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.8□□□□□ -0.36
Cdh11P55288 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Cdh11P55288 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdh11P55288 Gm8749-201ENSMUST00000117737 331 ntBASIC12.8□□□□□ -0.36
Cdh11P55288 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC12.8□□□□□ -0.36
Cdh11P55288 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC12.8□□□□□ -0.36
Cdh11P55288 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC12.8□□□□□ -0.36
Cdh11P55288 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms