Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Pdcd6ip-201ENSMUST00000035086 5951 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Gm14451-201ENSMUST00000121581 1542 ntBASIC13.28□□□□□ -0.28
Trim3Q9R1R2 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim3Q9R1R2 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Trim3Q9R1R2 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Gm9824-201ENSMUST00000178707 561 ntBASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Gm44872-201ENSMUST00000207864 420 ntBASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Dysf-214ENSMUST00000204354 6432 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Gm19863-201ENSMUST00000192480 2218 ntBASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trim3Q9R1R2 Prrg3-203ENSMUST00000170096 3408 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Gm8116-201ENSMUST00000182917 1201 ntBASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Mir6956-201ENSMUST00000183598 62 ntBASIC13.26□□□□□ -0.29
Trim3Q9R1R2 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC13.26□□□□□ -0.29
Trim3Q9R1R2 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Gm45098-201ENSMUST00000207179 657 ntBASIC13.26□□□□□ -0.29
Trim3Q9R1R2 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Trim3Q9R1R2 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 289.2 ms