Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm25951-201ENSMUST00000175330 64 ntBASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Gm7003-201ENSMUST00000195089 312 ntBASIC18.74■□□□□ 0.59
Scn4aQ9ER60 AC159819.2-201ENSMUST00000216151 342 ntBASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Gm5369-201ENSMUST00000217499 588 ntBASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Lbp-201ENSMUST00000016168 2525 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Gm12795-201ENSMUST00000117594 539 ntBASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Olfr398-201ENSMUST00000053874 945 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Phospho2-202ENSMUST00000112266 2194 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Scn4aQ9ER60 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn4aQ9ER60 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC18.73■□□□□ 0.59
Scn4aQ9ER60 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn4aQ9ER60 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn4aQ9ER60 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn4aQ9ER60 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn4aQ9ER60 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn4aQ9ER60 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Scn4aQ9ER60 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 AC166992.1-201ENSMUST00000216356 565 ntBASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 n-R5s77-201ENSMUST00000083757 119 ntBASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 AC174678.1-201ENSMUST00000228007 2749 ntBASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC18.72■□□□□ 0.59
Scn4aQ9ER60 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Fam168a-204ENSMUST00000207564 1083 ntTSL 5 BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Fam168a-206ENSMUST00000208013 1129 ntTSL 5 BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Scn4aQ9ER60 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Gm6447-201ENSMUST00000118905 835 ntBASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Gm2445-201ENSMUST00000182798 989 ntBASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 AC121598.2-201ENSMUST00000228376 2325 ntBASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Scn4aQ9ER60 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Zkscan14-203ENSMUST00000198959 2243 ntBASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Gm6580-201ENSMUST00000117504 1357 ntBASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Gm12029-201ENSMUST00000120073 832 ntBASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Scn4aQ9ER60 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms