Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC16.41■□□□□ 0.22
Vps53Q8CCB4 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Vps53Q8CCB4 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.41■□□□□ 0.22
Vps53Q8CCB4 Fnbp1-209ENSMUST00000113562 4515 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 AC135669.1-201ENSMUST00000213585 412 ntBASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Hist1h2al-201ENSMUST00000091708 339 ntBASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Hnf1b-203ENSMUST00000108114 2659 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Vps53Q8CCB4 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
Vps53Q8CCB4 Rsrp1-201ENSMUST00000078084 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Gm6539-201ENSMUST00000119157 1064 ntBASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Gm14719-201ENSMUST00000121891 340 ntBASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Gm16215-201ENSMUST00000161990 637 ntBASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Alkbh6-201ENSMUST00000060834 982 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Vps53Q8CCB4 Syt7-205ENSMUST00000224135 1557 ntBASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Klk2-ps-201ENSMUST00000205342 571 ntBASIC16.38■□□□□ 0.21
Vps53Q8CCB4 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Vps53Q8CCB4 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms