Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Mcm6-201ENSMUST00000027601 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Gm24158-201ENSMUST00000175263 71 ntBASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Gm10253-201ENSMUST00000194270 940 ntBASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Gm2272-201ENSMUST00000194903 582 ntBASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Gm13127-201ENSMUST00000118978 1389 ntBASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Ttc7-201ENSMUST00000041110 4614 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 AC121801.1-201ENSMUST00000225363 1899 ntBASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Gm38102-201ENSMUST00000192791 1935 ntBASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Gm6198-201ENSMUST00000191337 2929 ntBASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Mir7023-201ENSMUST00000185093 64 ntBASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 CT010506.4-201ENSMUST00000225457 351 ntBASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Gm38346-201ENSMUST00000192379 2639 ntBASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Gm38042-201ENSMUST00000191614 5208 ntBASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Slc7a7-206ENSMUST00000197440 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Sh3rf1Q69ZI1 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Gm8749-201ENSMUST00000117737 331 ntBASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Sh3rf1Q69ZI1 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms