Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim28Q62318 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Trim28Q62318 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC18.15■□□□□ 0.5
Trim28Q62318 Gm43697-201ENSMUST00000199637 2581 ntBASIC18.15■□□□□ 0.5
Trim28Q62318 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC18.15■□□□□ 0.5
Trim28Q62318 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Ccne2-202ENSMUST00000108324 2908 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC18.15■□□□□ 0.5
Trim28Q62318 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim28Q62318 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim28Q62318 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Trim28Q62318 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim28Q62318 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Trim28Q62318 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Trim28Q62318 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Trim28Q62318 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Fermt2-201ENSMUST00000045905 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Trim28Q62318 Stk38-202ENSMUST00000119274 1939 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trim28Q62318 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC18.14■□□□□ 0.49
Trim28Q62318 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC18.14■□□□□ 0.49
Trim28Q62318 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trim28Q62318 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Gm20632-201ENSMUST00000176760 2427 ntBASIC18.14■□□□□ 0.49
Trim28Q62318 Gm15889-202ENSMUST00000212669 2443 ntBASIC18.14■□□□□ 0.49
Trim28Q62318 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Gm45760-201ENSMUST00000212190 1782 ntBASIC18.14■□□□□ 0.49
Trim28Q62318 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Trim28Q62318 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim28Q62318 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Trim28Q62318 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim28Q62318 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC18.13■□□□□ 0.49
Trim28Q62318 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Oasl1-202ENSMUST00000112143 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim28Q62318 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Gm5303-201ENSMUST00000117943 1252 ntBASIC18.13■□□□□ 0.49
Trim28Q62318 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC18.13■□□□□ 0.49
Trim28Q62318 Far2os1-201ENSMUST00000162391 555 ntTSL 2 BASIC18.13■□□□□ 0.49
Trim28Q62318 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Trim28Q62318 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Trim28Q62318 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC18.13■□□□□ 0.49
Trim28Q62318 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim28Q62318 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Trim28Q62318 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Kir3dl1-202ENSMUST00000113105 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim28Q62318 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Eno2-216ENSMUST00000204896 1640 ntTSL 5 BASIC18.12■□□□□ 0.49
Trim28Q62318 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
Trim28Q62318 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Trim28Q62318 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Trim28Q62318 Mup-ps23-201ENSMUST00000118063 630 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm12537-201ENSMUST00000119266 1002 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm13612-201ENSMUST00000119276 390 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm12070-201ENSMUST00000119551 1002 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm12671-201ENSMUST00000119978 1002 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm13292-201ENSMUST00000120014 1000 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm12403-201ENSMUST00000121384 959 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Trim28Q62318 Gm10359-201ENSMUST00000180167 1002 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm12033-201ENSMUST00000180654 1002 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm5559-201ENSMUST00000180755 1002 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm8652-201ENSMUST00000181363 964 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm4335-201ENSMUST00000182581 1004 ntBASIC18.12■□□□□ 0.49
Trim28Q62318 Gm7561-201ENSMUST00000211203 886 ntBASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms