Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Mir7654-201ENSMUST00000185082 70 ntBASIC12.15□□□□□ -0.46
Nkx3-1P97436 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Gm7558-201ENSMUST00000193221 1165 ntBASIC12.15□□□□□ -0.46
Nkx3-1P97436 Gm18307-201ENSMUST00000206864 949 ntBASIC12.15□□□□□ -0.46
Nkx3-1P97436 Gm5425-201ENSMUST00000214125 459 ntBASIC12.15□□□□□ -0.46
Nkx3-1P97436 Gm5035-201ENSMUST00000215581 927 ntBASIC12.15□□□□□ -0.46
Nkx3-1P97436 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.15□□□□□ -0.46
Nkx3-1P97436 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Eaf1-201ENSMUST00000022446 4918 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.46
Nkx3-1P97436 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
Nkx3-1P97436 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
Nkx3-1P97436 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Nkx3-1P97436 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
Nkx3-1P97436 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Setd1b-206ENSMUST00000174836 7515 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Nkx3-1P97436 AC155252.1-201ENSMUST00000226462 1208 ntBASIC12.14□□□□□ -0.47
Nkx3-1P97436 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Nkx3-1P97436 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC12.13□□□□□ -0.47
Nkx3-1P97436 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC12.13□□□□□ -0.47
Nkx3-1P97436 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.13□□□□□ -0.47
Nkx3-1P97436 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Gm7446-201ENSMUST00000221035 1240 ntBASIC12.13□□□□□ -0.47
Nkx3-1P97436 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.13□□□□□ -0.47
Nkx3-1P97436 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Nkx3-1P97436 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 10.2 ms