Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lire1P11260 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Lire1P11260 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lire1P11260 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lire1P11260 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lire1P11260 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lire1P11260 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Lire1P11260 Camk2g-217ENSMUST00000226630 1937 ntBASIC13.39□□□□□ -0.27
Lire1P11260 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Lire1P11260 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Lire1P11260 Fgf17-202ENSMUST00000227123 1336 ntBASIC13.39□□□□□ -0.27
Lire1P11260 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Lire1P11260 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Gm42928-201ENSMUST00000197338 3339 ntBASIC13.38□□□□□ -0.27
Lire1P11260 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Mtif3-202ENSMUST00000066675 4927 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC13.38□□□□□ -0.27
Lire1P11260 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC13.38□□□□□ -0.27
Lire1P11260 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.38□□□□□ -0.27
Lire1P11260 Gm18889-201ENSMUST00000174284 929 ntBASIC13.38□□□□□ -0.27
Lire1P11260 Gm8318-201ENSMUST00000182954 872 ntBASIC13.38□□□□□ -0.27
Lire1P11260 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC13.38□□□□□ -0.27
Lire1P11260 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Lire1P11260 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Igf2r-201ENSMUST00000024599 8887 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lire1P11260 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Lire1P11260 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC13.37□□□□□ -0.27
Lire1P11260 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Lire1P11260 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.37□□□□□ -0.27
Lire1P11260 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
Lire1P11260 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
Lire1P11260 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.37□□□□□ -0.27
Lire1P11260 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Gm11453-201ENSMUST00000117318 1007 ntBASIC13.37□□□□□ -0.27
Lire1P11260 Gm12008-201ENSMUST00000117791 755 ntBASIC13.37□□□□□ -0.27
Lire1P11260 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC13.37□□□□□ -0.27
Lire1P11260 Gm11745-201ENSMUST00000121669 448 ntBASIC13.37□□□□□ -0.27
Lire1P11260 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Lire1P11260 Gm27430-201ENSMUST00000184585 107 ntBASIC13.37□□□□□ -0.27
Lire1P11260 Gm43474-201ENSMUST00000196415 774 ntBASIC13.37□□□□□ -0.27
Lire1P11260 Gm44333-201ENSMUST00000197168 107 ntBASIC13.37□□□□□ -0.27
Lire1P11260 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Lire1P11260 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC13.37□□□□□ -0.27
Lire1P11260 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.37□□□□□ -0.27
Lire1P11260 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Adamts7-202ENSMUST00000113060 5098 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
Lire1P11260 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC13.37□□□□□ -0.27
Lire1P11260 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
Lire1P11260 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Lire1P11260 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lire1P11260 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC13.37□□□□□ -0.27
Lire1P11260 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lire1P11260 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms