Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col3a1P08121 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col3a1P08121 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col3a1P08121 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col3a1P08121 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Col3a1P08121 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col3a1P08121 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col3a1P08121 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col3a1P08121 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col3a1P08121 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Gm8337-201ENSMUST00000187358 1938 ntBASIC16.61■□□□□ 0.25
Col3a1P08121 Mir1982-201ENSMUST00000157368 74 ntBASIC16.61■□□□□ 0.25
Col3a1P08121 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC16.61■□□□□ 0.25
Col3a1P08121 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Col3a1P08121 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
Col3a1P08121 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Tpd52l2-203ENSMUST00000108799 985 ntTSL 5 BASIC16.61■□□□□ 0.25
Col3a1P08121 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Col3a1P08121 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC16.61■□□□□ 0.25
Col3a1P08121 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Gm12742-201ENSMUST00000117326 410 ntBASIC16.61■□□□□ 0.25
Col3a1P08121 Gm13886-201ENSMUST00000117876 1183 ntBASIC16.61■□□□□ 0.25
Col3a1P08121 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC16.61■□□□□ 0.25
Col3a1P08121 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col3a1P08121 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Col3a1P08121 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Col3a1P08121 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC16.6■□□□□ 0.25
Col3a1P08121 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC16.6■□□□□ 0.25
Col3a1P08121 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC16.6■□□□□ 0.25
Col3a1P08121 Gm10156-201ENSMUST00000122364 462 ntBASIC16.6■□□□□ 0.25
Col3a1P08121 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC16.6■□□□□ 0.25
Col3a1P08121 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Col3a1P08121 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col3a1P08121 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Col3a1P08121 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC16.59■□□□□ 0.25
Col3a1P08121 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC16.59■□□□□ 0.25
Col3a1P08121 Gm8213-201ENSMUST00000118191 441 ntBASIC16.59■□□□□ 0.25
Col3a1P08121 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC16.59■□□□□ 0.25
Col3a1P08121 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC16.59■□□□□ 0.25
Col3a1P08121 Gm24644-201ENSMUST00000157114 139 ntBASIC16.59■□□□□ 0.25
Col3a1P08121 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 E230013L22Rik-201ENSMUST00000180408 1856 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Susd2-201ENSMUST00000077610 2275 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Col3a1P08121 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col3a1P08121 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Col3a1P08121 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Col3a1P08121 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Col3a1P08121 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Col3a1P08121 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Col3a1P08121 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Col3a1P08121 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.25
Col3a1P08121 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col3a1P08121 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
Col3a1P08121 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
Col3a1P08121 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Col3a1P08121 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms