Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trem1Q9JKE2 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trem1Q9JKE2 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trem1Q9JKE2 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Trem1Q9JKE2 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Trem1Q9JKE2 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Trem1Q9JKE2 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC12.62□□□□□ -0.39
Trem1Q9JKE2 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Trem1Q9JKE2 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Gm13312-201ENSMUST00000119631 718 ntBASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Gm15794-201ENSMUST00000120182 631 ntBASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Tnip1-201ENSMUST00000018482 2810 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
Trem1Q9JKE2 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Gm25925-201ENSMUST00000158314 306 ntBASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Gm19164-201ENSMUST00000210667 640 ntBASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Vti1a-206ENSMUST00000225529 1244 ntBASIC12.6□□□□□ -0.39
Trem1Q9JKE2 AC112142.1-201ENSMUST00000228796 918 ntBASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.6□□□□□ -0.39
Trem1Q9JKE2 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Grtp1-206ENSMUST00000210317 3013 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Gm11950-201ENSMUST00000121615 838 ntBASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Gm7556-201ENSMUST00000201178 1084 ntBASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Gm5587-201ENSMUST00000206270 674 ntBASIC12.59□□□□□ -0.39
Trem1Q9JKE2 AC127349.1-201ENSMUST00000224590 266 ntBASIC12.59□□□□□ -0.39
Trem1Q9JKE2 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms