Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC11.47□□□□□ -0.57
RTRAFQ9CQE8 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
RTRAFQ9CQE8 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RTRAFQ9CQE8 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RTRAFQ9CQE8 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
RTRAFQ9CQE8 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RTRAFQ9CQE8 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
RTRAFQ9CQE8 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Mbnl2-204ENSMUST00000227012 2390 ntBASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Tmem86b-202ENSMUST00000205360 1344 ntTSL 2 BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Kmt5c-203ENSMUST00000108583 2177 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Gm29518-201ENSMUST00000190858 372 ntBASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Gm7506-201ENSMUST00000207758 815 ntBASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
RTRAFQ9CQE8 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
RTRAFQ9CQE8 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Gm38102-201ENSMUST00000192791 1935 ntBASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Dpp6-201ENSMUST00000071500 3826 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
RTRAFQ9CQE8 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Nup88-201ENSMUST00000035283 2450 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Bhmt-201ENSMUST00000099309 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
RTRAFQ9CQE8 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 47.9 ms