Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Nudt18-203ENSMUST00000228768 1578 ntBASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf1Q69ZI1 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf1Q69ZI1 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Sh3rf1Q69ZI1 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Sh3rf1Q69ZI1 Ctbp1-212ENSMUST00000202962 3595 ntTSL 2 BASIC14.33□□□□□ -0.11
Sh3rf1Q69ZI1 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Gm18057-201ENSMUST00000208220 503 ntBASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 E430024P14Rik-203ENSMUST00000160545 2833 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Sh3rf1Q69ZI1 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Tcf21-202ENSMUST00000218002 1788 ntBASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Gm12017-201ENSMUST00000122453 1003 ntBASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Gm9726-201ENSMUST00000180321 678 ntBASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 AC131187.1-201ENSMUST00000224567 809 ntBASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Men1-208ENSMUST00000113504 2663 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Sh3rf1Q69ZI1 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Il17rd-203ENSMUST00000225146 3366 ntBASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Tnk2-201ENSMUST00000115120 2794 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 AC124732.2-201ENSMUST00000221977 316 ntBASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Gm12500-202ENSMUST00000186471 2428 ntBASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC14.31□□□□□ -0.12
Sh3rf1Q69ZI1 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Sh3rf1Q69ZI1 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms