Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Edil3-203ENSMUST00000118731 2721 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim27Q62158 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
Trim27Q62158 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim27Q62158 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim27Q62158 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim27Q62158 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Gm5639-201ENSMUST00000122305 2403 ntBASIC17.31■□□□□ 0.36
Trim27Q62158 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim27Q62158 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Trim27Q62158 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC17.31■□□□□ 0.36
Trim27Q62158 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Gm27680-201ENSMUST00000184192 160 ntBASIC17.31■□□□□ 0.36
Trim27Q62158 Gm33320-201ENSMUST00000192232 530 ntBASIC17.31■□□□□ 0.36
Trim27Q62158 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 AC154806.6-201ENSMUST00000228192 202 ntBASIC17.31■□□□□ 0.36
Trim27Q62158 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 AW209491-202ENSMUST00000178289 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim27Q62158 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim27Q62158 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Trim27Q62158 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Trim27Q62158 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trim27Q62158 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Trim27Q62158 Ecm1-202ENSMUST00000117507 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC17.3■□□□□ 0.36
Trim27Q62158 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trim27Q62158 Gm27321-201ENSMUST00000185021 205 ntBASIC17.3■□□□□ 0.36
Trim27Q62158 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Trim27Q62158 Gm44344-201ENSMUST00000200287 129 ntBASIC17.3■□□□□ 0.36
Trim27Q62158 Zswim7-201ENSMUST00000072916 732 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Vegfa-202ENSMUST00000071648 3451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim27Q62158 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Pdpn-201ENSMUST00000030317 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Gm26604-201ENSMUST00000180926 1766 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Trim27Q62158 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC17.3■□□□□ 0.36
Trim27Q62158 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim27Q62158 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim27Q62158 Gm15460-201ENSMUST00000118147 391 ntBASIC17.29■□□□□ 0.36
Trim27Q62158 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC17.29■□□□□ 0.36
Trim27Q62158 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC17.29■□□□□ 0.36
Trim27Q62158 Mir497b-201ENSMUST00000093601 125 ntBASIC17.29■□□□□ 0.36
Trim27Q62158 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim27Q62158 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Trim27Q62158 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim27Q62158 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim27Q62158 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Gm12626-201ENSMUST00000117339 1983 ntBASIC17.28■□□□□ 0.36
Trim27Q62158 Gm12623-201ENSMUST00000119849 1983 ntBASIC17.28■□□□□ 0.36
Trim27Q62158 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim27Q62158 Tcf4-258ENSMUST00000202937 2103 ntTSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 120.1 ms