Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
ClpbQ60649 Madd-201ENSMUST00000066420 3753 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
ClpbQ60649 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Gm37411-201ENSMUST00000194180 2282 ntBASIC13.56□□□□□ -0.24
ClpbQ60649 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
ClpbQ60649 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
ClpbQ60649 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
ClpbQ60649 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
ClpbQ60649 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC13.55□□□□□ -0.24
ClpbQ60649 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
ClpbQ60649 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC13.55□□□□□ -0.24
ClpbQ60649 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
ClpbQ60649 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
ClpbQ60649 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
ClpbQ60649 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
ClpbQ60649 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC13.55□□□□□ -0.24
ClpbQ60649 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC13.55□□□□□ -0.24
ClpbQ60649 Gm27622-201ENSMUST00000183779 60 ntBASIC13.55□□□□□ -0.24
ClpbQ60649 Mir7023-201ENSMUST00000185093 64 ntBASIC13.55□□□□□ -0.24
ClpbQ60649 Gm18766-201ENSMUST00000189811 808 ntBASIC13.55□□□□□ -0.24
ClpbQ60649 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Gm37230-201ENSMUST00000194491 818 ntBASIC13.55□□□□□ -0.24
ClpbQ60649 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC13.55□□□□□ -0.24
ClpbQ60649 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Fut11-201ENSMUST00000048016 4163 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
ClpbQ60649 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
ClpbQ60649 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
ClpbQ60649 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Gm19863-201ENSMUST00000192480 2218 ntBASIC13.54□□□□□ -0.24
ClpbQ60649 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.54□□□□□ -0.24
ClpbQ60649 Olfr317-203ENSMUST00000216196 2781 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
ClpbQ60649 CT025610.1-201ENSMUST00000224552 1786 ntBASIC13.54□□□□□ -0.24
ClpbQ60649 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Gm25144-201ENSMUST00000179561 110 ntBASIC13.54□□□□□ -0.24
ClpbQ60649 Gm25352-201ENSMUST00000179815 110 ntBASIC13.54□□□□□ -0.24
ClpbQ60649 Gm29541-201ENSMUST00000191351 678 ntBASIC13.54□□□□□ -0.24
ClpbQ60649 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC13.54□□□□□ -0.24
ClpbQ60649 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
ClpbQ60649 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
ClpbQ60649 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC13.54□□□□□ -0.24
ClpbQ60649 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC13.54□□□□□ -0.24
ClpbQ60649 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC13.54□□□□□ -0.24
ClpbQ60649 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
ClpbQ60649 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC13.54□□□□□ -0.24
ClpbQ60649 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ClpbQ60649 Ssr1-204ENSMUST00000225319 1610 ntBASIC13.53□□□□□ -0.24
ClpbQ60649 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
ClpbQ60649 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
ClpbQ60649 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ClpbQ60649 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
ClpbQ60649 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms