Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Col28a1Q2UY11 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Serpinh1-201ENSMUST00000094154 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 AC025913.2-201ENSMUST00000220136 1766 ntBASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Sfxn4-203ENSMUST00000135808 1309 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Gm12500-202ENSMUST00000186471 2428 ntBASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Zfp202-201ENSMUST00000026693 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Gm6944-201ENSMUST00000182449 1006 ntBASIC13.71□□□□□ -0.21
Col28a1Q2UY11 AC159295.1-201ENSMUST00000225326 940 ntBASIC13.71□□□□□ -0.21
Col28a1Q2UY11 AC124549.3-201ENSMUST00000225541 367 ntBASIC13.71□□□□□ -0.21
Col28a1Q2UY11 AC147366.1-201ENSMUST00000227671 852 ntBASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Col28a1Q2UY11 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Col28a1Q2UY11 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Reck-201ENSMUST00000030198 4433 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm43570-201ENSMUST00000199951 3688 ntBASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm44492-201ENSMUST00000197012 141 ntBASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm44872-201ENSMUST00000207864 420 ntBASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 AC159114.1-201ENSMUST00000220349 266 ntBASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Col28a1Q2UY11 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC13.69□□□□□ -0.22
Col28a1Q2UY11 Gm15889-202ENSMUST00000212669 2443 ntBASIC13.69□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms