Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Cdx1P18111 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Gm6858-201ENSMUST00000208582 1468 ntBASIC11.43□□□□□ -0.58
Cdx1P18111 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Cdx1P18111 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC11.43□□□□□ -0.58
Cdx1P18111 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Cdx1P18111 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Mfn2-203ENSMUST00000105715 4043 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Cdx1P18111 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC11.42□□□□□ -0.58
Cdx1P18111 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Cdx1P18111 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Gm43575-201ENSMUST00000196420 516 ntBASIC11.42□□□□□ -0.58
Cdx1P18111 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC11.42□□□□□ -0.58
Cdx1P18111 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC11.42□□□□□ -0.58
Cdx1P18111 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Gm7002-201ENSMUST00000221386 2165 ntBASIC11.42□□□□□ -0.58
Cdx1P18111 Gm16582-201ENSMUST00000159627 1930 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC11.42□□□□□ -0.58
Cdx1P18111 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC11.42□□□□□ -0.58
Cdx1P18111 Klf12-201ENSMUST00000097079 1856 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Acap2-201ENSMUST00000058033 6493 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Cdx1P18111 Gm7669-201ENSMUST00000210184 1603 ntBASIC11.42□□□□□ -0.58
Cdx1P18111 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
Cdx1P18111 Gpr153-201ENSMUST00000055754 3757 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC11.42□□□□□ -0.58
Cdx1P18111 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Cdx1P18111 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC11.42□□□□□ -0.58
Cdx1P18111 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Cdx1P18111 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Cdx1P18111 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC11.41□□□□□ -0.58
Cdx1P18111 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Gm14371-201ENSMUST00000138925 1518 ntBASIC11.41□□□□□ -0.58
Cdx1P18111 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
Cdx1P18111 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC11.41□□□□□ -0.58
Cdx1P18111 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 Ndufaf2-202ENSMUST00000223734 556 ntBASIC11.41□□□□□ -0.58
Cdx1P18111 AC225888.1-201ENSMUST00000227184 728 ntBASIC11.41□□□□□ -0.58
Cdx1P18111 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Gm20633-201ENSMUST00000176742 2831 ntBASIC11.41□□□□□ -0.58
Cdx1P18111 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC11.41□□□□□ -0.58
Cdx1P18111 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Cdx1P18111 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Cdx1P18111 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms