Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col1a1P11087 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Col1a1P11087 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Gm11400-201ENSMUST00000120853 1214 ntBASIC16.3■□□□□ 0.2
Col1a1P11087 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Gm42929-201ENSMUST00000198374 1286 ntBASIC16.3■□□□□ 0.2
Col1a1P11087 Trmt112-ps1-201ENSMUST00000202320 375 ntBASIC16.3■□□□□ 0.2
Col1a1P11087 Olfr284-202ENSMUST00000206647 966 ntBASIC16.3■□□□□ 0.2
Col1a1P11087 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC16.3■□□□□ 0.2
Col1a1P11087 Gm2824-203ENSMUST00000226189 1228 ntBASIC16.3■□□□□ 0.2
Col1a1P11087 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col1a1P11087 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
Col1a1P11087 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Rhobtb1-210ENSMUST00000167384 2331 ntTSL 5 BASIC16.3■□□□□ 0.2
Col1a1P11087 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col1a1P11087 Gm9755-201ENSMUST00000032981 1356 ntBASIC16.3■□□□□ 0.2
Col1a1P11087 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC16.29■□□□□ 0.2
Col1a1P11087 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC16.29■□□□□ 0.2
Col1a1P11087 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC16.29■□□□□ 0.2
Col1a1P11087 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC16.29■□□□□ 0.2
Col1a1P11087 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC16.29■□□□□ 0.2
Col1a1P11087 Gm38341-201ENSMUST00000195357 515 ntBASIC16.29■□□□□ 0.2
Col1a1P11087 Gm37922-201ENSMUST00000195596 455 ntBASIC16.29■□□□□ 0.2
Col1a1P11087 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Gm17870-201ENSMUST00000219489 1174 ntBASIC16.29■□□□□ 0.2
Col1a1P11087 Gm24526-201ENSMUST00000082921 158 ntBASIC16.29■□□□□ 0.2
Col1a1P11087 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col1a1P11087 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col1a1P11087 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Zfp157-202ENSMUST00000100524 869 ntTSL 3 BASIC16.29■□□□□ 0.2
Col1a1P11087 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC16.29■□□□□ 0.2
Col1a1P11087 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col1a1P11087 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Col1a1P11087 Rn7s1-201ENSMUST00000174924 300 ntBASIC16.29■□□□□ 0.2
Col1a1P11087 Rn7s2-201ENSMUST00000175032 300 ntBASIC16.29■□□□□ 0.2
Col1a1P11087 Gm26461-201ENSMUST00000175064 290 ntBASIC16.29■□□□□ 0.2
Col1a1P11087 Gm37497-201ENSMUST00000195830 798 ntBASIC16.29■□□□□ 0.2
Col1a1P11087 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC16.29■□□□□ 0.2
Col1a1P11087 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col1a1P11087 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Col1a1P11087 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Col1a1P11087 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Mir686-201ENSMUST00000102174 109 ntBASIC16.28■□□□□ 0.2
Col1a1P11087 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Col1a1P11087 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC16.28■□□□□ 0.2
Col1a1P11087 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Gm37259-201ENSMUST00000193903 849 ntBASIC16.28■□□□□ 0.2
Col1a1P11087 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC16.28■□□□□ 0.2
Col1a1P11087 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
Col1a1P11087 Gm17330-201ENSMUST00000221047 165 ntBASIC16.28■□□□□ 0.2
Col1a1P11087 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC16.28■□□□□ 0.2
Col1a1P11087 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Col1a1P11087 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col1a1P11087 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col1a1P11087 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col1a1P11087 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col1a1P11087 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col1a1P11087 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col1a1P11087 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col1a1P11087 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col1a1P11087 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col1a1P11087 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC16.27■□□□□ 0.2
Col1a1P11087 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC16.27■□□□□ 0.2
Col1a1P11087 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col1a1P11087 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC16.27■□□□□ 0.19
Col1a1P11087 Gm29396-201ENSMUST00000185659 716 ntBASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms