Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.07
Cdk5rap3Q99LM2 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Pnpla2-203ENSMUST00000164016 2625 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Oscar-202ENSMUST00000108645 1829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Oscar-201ENSMUST00000039507 1823 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 AC126549.2-201ENSMUST00000223997 1976 ntBASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Asxl1-201ENSMUST00000109790 6968 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Gm12882-201ENSMUST00000121696 517 ntBASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Retreg1-202ENSMUST00000110438 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Cdk5rap3Q99LM2 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 AC131690.1-201ENSMUST00000218406 374 ntBASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Matn2-206ENSMUST00000228570 2798 ntBASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 CT030684.3-201ENSMUST00000227308 2445 ntBASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Dnmt3b-203ENSMUST00000081628 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Cdk5rap3Q99LM2 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Gm12626-201ENSMUST00000117339 1983 ntBASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Gm12623-201ENSMUST00000119849 1983 ntBASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Gm37691-201ENSMUST00000192147 2573 ntBASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.62□□□□□ -0.07
Cdk5rap3Q99LM2 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms