Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Gm18222-201ENSMUST00000202416 1387 ntBASIC14.83□□□□□ -0.04
Clp1Q99LI9 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Clp1Q99LI9 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.82□□□□□ -0.04
Clp1Q99LI9 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Gm5940-201ENSMUST00000117582 1068 ntBASIC14.82□□□□□ -0.04
Clp1Q99LI9 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC14.82□□□□□ -0.04
Clp1Q99LI9 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC14.82□□□□□ -0.04
Clp1Q99LI9 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Gm7399-201ENSMUST00000032395 858 ntBASIC14.82□□□□□ -0.04
Clp1Q99LI9 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Clp1Q99LI9 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 AC168058.1-201ENSMUST00000219521 2282 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm11803-201ENSMUST00000119966 444 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm16177-201ENSMUST00000120728 718 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm14730-201ENSMUST00000122378 1045 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm22331-201ENSMUST00000158066 136 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm7498-201ENSMUST00000203282 1084 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm4971-201ENSMUST00000205991 1108 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm29154-230ENSMUST00000215044 1165 ntTSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Gm13859-201ENSMUST00000119936 1423 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 AC161252.3-201ENSMUST00000225465 1549 ntBASIC14.81□□□□□ -0.04
Clp1Q99LI9 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC14.81□□□□□ -0.04
Clp1Q99LI9 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Trim15-203ENSMUST00000174195 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Clp1Q99LI9 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms