Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Ushbp1Q8R370 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 AC166574.6-201ENSMUST00000227889 1806 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm7488-201ENSMUST00000117148 684 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm12882-201ENSMUST00000121696 517 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm15487-201ENSMUST00000122373 465 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm25144-201ENSMUST00000179561 110 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm25352-201ENSMUST00000179815 110 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm44855-201ENSMUST00000205725 362 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm7653-201ENSMUST00000214567 508 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Oaz1-ps-201ENSMUST00000052440 681 ntBASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Ctdp1-201ENSMUST00000036229 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Ushbp1Q8R370 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Gm28630-201ENSMUST00000187806 498 ntBASIC15.84■□□□□ 0.13
Ushbp1Q8R370 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Ushbp1Q8R370 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
Ushbp1Q8R370 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Ushbp1Q8R370 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ushbp1Q8R370 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ushbp1Q8R370 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ushbp1Q8R370 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
Ushbp1Q8R370 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ushbp1Q8R370 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Ushbp1Q8R370 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Gm26513-201ENSMUST00000181802 2489 ntBASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Gm37596-201ENSMUST00000193565 1021 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Ins2-209ENSMUST00000210288 918 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Gm9063-201ENSMUST00000223299 582 ntBASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Twf2-204ENSMUST00000188650 1508 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Taf6-201ENSMUST00000048698 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Ushbp1Q8R370 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC15.82■□□□□ 0.12
Ushbp1Q8R370 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms