Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Slc39a2-201ENSMUST00000047726 2334 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Gm43397-201ENSMUST00000196422 481 ntTSL 3 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Gm20949-201ENSMUST00000206478 952 ntBASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 CT025555.1-201ENSMUST00000225901 1217 ntBASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Gm6018-201ENSMUST00000216090 1306 ntBASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Sh3rf1Q69ZI1 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Tpd52-203ENSMUST00000091355 3081 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Gm7774-201ENSMUST00000200064 533 ntBASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 AC155729.1-201ENSMUST00000227758 544 ntBASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 CT025626.1-201ENSMUST00000223735 1455 ntBASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Gm45630-201ENSMUST00000210243 1911 ntBASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Sh3rf1Q69ZI1 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Bhlhb9-204ENSMUST00000180025 2812 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Iah1-204ENSMUST00000223345 1890 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Mir449b-201ENSMUST00000104833 80 ntBASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Gm22175-201ENSMUST00000175007 78 ntBASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Gm27321-201ENSMUST00000185021 205 ntBASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Sh3rf1Q69ZI1 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 54.4 ms