Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
Trim28Q62318 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Trim28Q62318 Gm17029-202ENSMUST00000146124 2899 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Gm7287-201ENSMUST00000205267 602 ntBASIC18.22■□□□□ 0.51
Trim28Q62318 Gm7067-201ENSMUST00000207698 1249 ntBASIC18.22■□□□□ 0.51
Trim28Q62318 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC18.22■□□□□ 0.51
Trim28Q62318 Gm18934-201ENSMUST00000216671 1044 ntBASIC18.22■□□□□ 0.51
Trim28Q62318 AC125117.1-201ENSMUST00000228121 468 ntBASIC18.22■□□□□ 0.51
Trim28Q62318 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Trim28Q62318 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Osbpl9-202ENSMUST00000084366 3134 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Trim28Q62318 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim28Q62318 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Trim28Q62318 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim28Q62318 Galt-201ENSMUST00000084695 1595 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim28Q62318 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Gm6983-201ENSMUST00000214912 628 ntBASIC18.21■□□□□ 0.51
Trim28Q62318 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Gm25857-201ENSMUST00000082788 129 ntBASIC18.21■□□□□ 0.51
Trim28Q62318 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC18.21■□□□□ 0.51
Trim28Q62318 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC18.21■□□□□ 0.51
Trim28Q62318 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Trim28Q62318 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
Trim28Q62318 Gm8775-201ENSMUST00000170943 1327 ntBASIC18.21■□□□□ 0.51
Trim28Q62318 Gnb2-202ENSMUST00000111020 1470 ntTSL 5 BASIC18.2■□□□□ 0.5
Trim28Q62318 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
Trim28Q62318 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Trim28Q62318 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC18.2■□□□□ 0.5
Trim28Q62318 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC18.2■□□□□ 0.5
Trim28Q62318 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Trim28Q62318 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Gm12928-201ENSMUST00000117115 573 ntBASIC18.2■□□□□ 0.5
Trim28Q62318 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC18.2■□□□□ 0.5
Trim28Q62318 Gm13829-201ENSMUST00000119600 138 ntBASIC18.2■□□□□ 0.5
Trim28Q62318 Mir1894-201ENSMUST00000122802 81 ntBASIC18.2■□□□□ 0.5
Trim28Q62318 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Trim28Q62318 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Car10-203ENSMUST00000107858 2742 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Ccdc151-201ENSMUST00000044926 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Trim28Q62318 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Trim28Q62318 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Trim28Q62318 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Trim28Q62318 Ggt6-203ENSMUST00000108499 874 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim28Q62318 Dda1-206ENSMUST00000138892 1738 ntTSL 3 BASIC18.19■□□□□ 0.5
Trim28Q62318 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Trim28Q62318 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC18.19■□□□□ 0.5
Trim28Q62318 Gm5276-201ENSMUST00000196683 1047 ntBASIC18.19■□□□□ 0.5
Trim28Q62318 Gm15222-202ENSMUST00000228667 1726 ntBASIC18.19■□□□□ 0.5
Trim28Q62318 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Trim28Q62318 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim28Q62318 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC18.18■□□□□ 0.5
Trim28Q62318 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim28Q62318 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim28Q62318 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC18.18■□□□□ 0.5
Trim28Q62318 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim28Q62318 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms