Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Mir6404-201ENSMUST00000183699 94 ntBASIC11.63□□□□□ -0.55
Trim63Q38HM4 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
Trim63Q38HM4 Gm9889-202ENSMUST00000206983 1577 ntBASIC11.62□□□□□ -0.55
Trim63Q38HM4 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Gm21596-201ENSMUST00000178049 1316 ntBASIC11.62□□□□□ -0.55
Trim63Q38HM4 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Gm13148-201ENSMUST00000118892 745 ntBASIC11.62□□□□□ -0.55
Trim63Q38HM4 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Mir5133-201ENSMUST00000174955 77 ntBASIC11.62□□□□□ -0.55
Trim63Q38HM4 Gm44672-201ENSMUST00000206944 1098 ntBASIC11.62□□□□□ -0.55
Trim63Q38HM4 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Pbld1-202ENSMUST00000178684 2404 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Nfxl1-202ENSMUST00000087216 3712 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Zfp125-201ENSMUST00000079237 2488 ntBASIC11.62□□□□□ -0.55
Trim63Q38HM4 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Trim63Q38HM4 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Dio3-201ENSMUST00000097228 1449 ntBASIC11.61□□□□□ -0.55
Trim63Q38HM4 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC11.61□□□□□ -0.55
Trim63Q38HM4 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Emilin1-201ENSMUST00000031055 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC11.61□□□□□ -0.55
Trim63Q38HM4 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Gm8495-201ENSMUST00000188740 694 ntBASIC11.61□□□□□ -0.55
Trim63Q38HM4 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Gm7791-201ENSMUST00000219066 539 ntBASIC11.61□□□□□ -0.55
Trim63Q38HM4 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Olfr322-201ENSMUST00000072030 984 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Samd4-203ENSMUST00000125113 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Trim63Q38HM4 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms